Download MendeleyCrystal Structure of a Periplasmic Sugar-binding protein from the Pseudomonas fluorescens
Kumaran, D., Mahmood, A., Burley, S.K., Swaminathan, S.To be published.
3H75
Crystal Structure of a Periplasmic Sugar-binding protein from the Pseudomonas fluorescens
- PDB DOI: https://doi.org/10.2210/pdb3H75/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Pseudomonas protegens Pf-5
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-04-24 Released: 2009-05-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.230
- R-Value Work: 0.208
- R-Value Observed: 0.208
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Periplasmic sugar-binding domain protein | 350 | Pseudomonas protegens Pf-5 | Mutation(s): 0 Gene Names: PFL_3664 |  | |
UniProt | |||||
Find proteins for Q4KAG7 (Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)) Explore Q4KAG7 Go to UniProtKB: Q4KAG7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q4KAG7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A], C [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | D [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.230
- R-Value Work: 0.208
- R-Value Observed: 0.208
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 65.526 | α = 90 |
| b = 81.275 | β = 90 |
| c = 63.082 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| SHELXD | phasing |
| SHELXE | model building |
| ARP/wARP | model building |
| CNS | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-05-12 Deposition Author(s): Kumaran, D., Mahmood, A., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-05-12
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary
