3H5C
X-Ray Structure of Protein Z-Protein Z Inhibitor Complex
- PDB DOI: https://doi.org/10.2210/pdb3H5C/pdb
- Classification: Hydrolase Inhibitor/blood clotting
- Organism(s): Homo sapiens
- Expression System: Spodoptera frugiperda
- Mutation(s): No
- Deposited: 2009-04-21 Released: 2010-04-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.26 Å
- R-Value Free: 0.269
- R-Value Work: 0.201
- R-Value Observed: 0.206
This is version 1.3 of the entry. See complete history.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein Z-dependent protease inhibitor | 423 | Homo sapiens | Mutation(s): 0 Gene Names: SERPINA10, ZPI, UNQ707/PRO1358 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UK55 (Homo sapiens) Explore Q9UK55 Go to UniProtKB: Q9UK55 | |||||
PHAROS: Q9UK55 GTEx: ENSG00000140093 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9UK55 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Vitamin K-dependent protein Z | 317 | Homo sapiens | Mutation(s): 0 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P22891 (Homo sapiens) Explore P22891 Go to UniProtKB: P22891 | |||||
PHAROS: P22891 GTEx: ENSG00000126231 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P22891 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | C [auth A] D [auth A] F [auth B] G [auth B] H [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
| BGC Query on BGC | E [auth B] | beta-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-VFUOTHLCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.26 Å
- R-Value Free: 0.269
- R-Value Work: 0.201
- R-Value Observed: 0.206
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 119.934 | α = 90 |
| b = 119.934 | β = 90 |
| c = 347.672 | γ = 120 |
| Software Name | Purpose |
|---|---|
| XDS | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2010-04-28 Deposition Author(s): Dementiev, A.A., Huang, X., Olson, S.T., Gettins, P.G.W.
Revision History (Full details and data files)
- Version 1.0: 2010-04-28
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary
