Download MendeleyCrystal structure of putative mandelate racemase from Bordetella Bronchiseptica RB50
Malashkevich, V.N., Toro, R., Morano, C., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3H12
Crystal structure of putative mandelate racemase from Bordetella Bronchiseptica RB50
- PDB DOI: https://doi.org/10.2210/pdb3H12/pdb
- Classification: ISOMERASE
- Organism(s): Bordetella bronchiseptica
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-04-10 Released: 2009-04-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.173
- R-Value Work: 0.146
- R-Value Observed: 0.147
wwPDB Validation 3D Report Full Report
This is version 1.6 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| mandelate racemase | 397 | Bordetella bronchiseptica | Mutation(s): 0 Gene Names: BB4687 |  | |
UniProt | |||||
Find proteins for A0A0H3LT39 (Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)) Explore A0A0H3LT39 Go to UniProtKB: A0A0H3LT39 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H3LT39 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NA Query on NA | C [auth A], D [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.173
- R-Value Work: 0.146
- R-Value Observed: 0.147
- Space Group: I 4
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 116.148 | α = 90 |
| b = 116.148 | β = 90 |
| c = 128.136 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| SHELX | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| CBASS | data collection |
| HKL-2000 | data reduction |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2009-04-21 Deposition Author(s): Malashkevich, V.N., Toro, R., Morano, C., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-04-21
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance - Version 1.2: 2012-10-24
Changes: Structure summary - Version 1.3: 2017-11-01
Changes: Refinement description - Version 1.4: 2018-11-21
Changes: Data collection, Structure summary - Version 1.5: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.6: 2024-02-21
Changes: Data collection, Database references
