Download MendeleyCrystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase from Yersinia pestis CO92
Nocek, B., Gu, M., Kwon, K., Joachimiak, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
3H07
Crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase from Yersinia pestis CO92
- PDB DOI: https://doi.org/10.2210/pdb3H07/pdb
- Classification: LYASE
- Organism(s): Yersinia pestis CO92
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-04-08 Released: 2009-05-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.253
- R-Value Work: 0.199
- R-Value Observed: 0.201
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 3,4-dihydroxy-2-butanone 4-phosphate synthase | 220 | Yersinia pestis CO92 | Mutation(s): 0 EC: 4.1.99.12 |  | |
UniProt | |||||
Find proteins for Q8ZI56 (Yersinia pestis) Explore Q8ZI56 Go to UniProtKB: Q8ZI56 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8ZI56 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.95 Å
- R-Value Free: 0.253
- R-Value Work: 0.199
- R-Value Observed: 0.201
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/M33H07
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 39.907 | α = 90 |
| b = 70.815 | β = 90.13 |
| c = 62.297 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| MOLREP | phasing |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-05-05 Deposition Author(s): Nocek, B., Gu, M., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2009-05-05
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2011-12-14
Changes: Database references - Version 1.3: 2017-11-01
Changes: Refinement description, Structure summary - Version 1.4: 2023-09-06
Changes: Data collection, Database references, Refinement description
