Download MendeleyThe crystal structure of disulfide interchange protein from Neisseria gonorrhoeae
Zhang, Z., Burley, S.K., Swaminathan, S.To be published.
3GV1
Crystal structure of disulfide interchange protein from Neisseria gonorrhoeae
- PDB DOI: https://doi.org/10.2210/pdb3GV1/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Neisseria gonorrhoeae FA 1090
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-03-30 Released: 2009-04-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.228
- R-Value Work: 0.180
- R-Value Observed: 0.182
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Disulfide interchange protein | 147 | Neisseria gonorrhoeae FA 1090 | Mutation(s): 0 Gene Names: NGO1438 |  | |
UniProt | |||||
Find proteins for Q5F6V7 (Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)) Explore Q5F6V7 Go to UniProtKB: Q5F6V7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5F6V7 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BEZ Query on BEZ | D [auth A], E [auth B], F [auth B] | BENZOIC ACID C7 H6 O2 WPYMKLBDIGXBTP-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.228
- R-Value Work: 0.180
- R-Value Observed: 0.182
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 40.329 | α = 90 |
| b = 76.777 | β = 94.3 |
| c = 64.305 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| PHENIX | model building |
| PHENIX | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2009-04-14 Deposition Author(s): Zhang, Z., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-04-14
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary
