Download MendeleyCrystal structure of a short-chain dehydrogenase/reductase from Vibrio parahaemolyticus
Patskovsky, Y., Bonanno, J.B., Freeman, J., Bain, K.T., Miller, S., Sampathkumar, P., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3GUY
Crystal structure of a short-chain dehydrogenase/reductase from Vibrio parahaemolyticus
- PDB DOI: https://doi.org/10.2210/pdb3GUY/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Vibrio parahaemolyticus AQ3810
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2009-03-30 Released: 2009-04-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.249
- R-Value Work: 0.200
- R-Value Observed: 0.202
wwPDB Validation 3D Report Full Report
This is version 1.6 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Short-chain dehydrogenase/reductase SDR | 230 | Vibrio parahaemolyticus AQ3810 | Mutation(s): 2 Gene Names: A79_5576 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.249
- R-Value Work: 0.200
- R-Value Observed: 0.202
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 68.814 | α = 72.38 |
| b = 71.315 | β = 89.39 |
| c = 93.075 | γ = 74.3 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| MOSFLM | data reduction |
| SHELXCD | phasing |
| SHELXE | model building |
Entry History
Deposition Data
- Released Date: 2009-04-14 Deposition Author(s): Patskovsky, Y., Bonanno, J.B., Freeman, J., Bain, K.T., Miller, S., Sampathkumar, P., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-04-14
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2018-11-21
Changes: Data collection, Structure summary - Version 1.4: 2021-02-10
Changes: Database references, Structure summary - Version 1.5: 2021-10-13
Changes: Database references - Version 1.6: 2024-02-21
Changes: Data collection
