Download MendeleyCrystal structure of an N-acetylglucosamine 2-epimerase family protein from Xylella fastidiosa
Bonanno, J.B., Rutter, M., Bain, K.T., Iizuka, M., Romero, R., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3GT5
Crystal structure of an N-acetylglucosamine 2-epimerase family protein from Xylella fastidiosa
- PDB DOI: https://doi.org/10.2210/pdb3GT5/pdb
- Classification: ISOMERASE
- Organism(s): Xylella fastidiosa M23
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-03-27 Released: 2009-04-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.221
- R-Value Work: 0.183
- R-Value Observed: 0.185
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| N-acetylglucosamine 2-epimerase | 402 | Xylella fastidiosa M23 | Mutation(s): 0 Gene Names: XfasM23_1239 |  | |
UniProt | |||||
Find proteins for B2I5L9 (Xylella fastidiosa (strain M23)) Explore B2I5L9 Go to UniProtKB: B2I5L9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B2I5L9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | B [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.221
- R-Value Work: 0.183
- R-Value Observed: 0.185
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.401 | α = 90 |
| b = 72.052 | β = 90 |
| c = 99.606 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| MOSFLM | data reduction |
| SHELXCD | phasing |
| SHELXE | model building |
Entry History
Deposition Data
- Released Date: 2009-04-14 Deposition Author(s): Bonanno, J.B., Rutter, M., Bain, K.T., Iizuka, M., Romero, R., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-04-14
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2018-11-21
Changes: Data collection, Structure summary - Version 1.4: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2024-02-21
Changes: Data collection, Database references
