Download MendeleyCRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN 11 METHYLASE FROM Lactobacillus delbrueckii subsp. bulgaricus
Patskovsky, Y., Ramagopal, U.A., Toro, R., Morano, C., Freeman, J., Chang, S., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3GRZ
CRYSTAL STRUCTURE OF ribosomal protein L11 methylase FROM Lactobacillus delbrueckii subsp. bulgaricus
- PDB DOI: https://doi.org/10.2210/pdb3GRZ/pdb
- Classification: TRANSFERASE
- Organism(s): Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-03-26 Released: 2009-04-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.225
- R-Value Work: 0.174
- R-Value Observed: 0.175
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosomal protein L11 methyltransferase | 205 | Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | Mutation(s): 0 Gene Names: prmA, LBUL_0809 EC: 2.1.1 |  | |
UniProt | |||||
Find proteins for Q04AV7 (Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365 / Lb-18)) Explore Q04AV7 Go to UniProtKB: Q04AV7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q04AV7 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth A], D [auth A], E [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.225
- R-Value Work: 0.174
- R-Value Observed: 0.175
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 148.979 | α = 90 |
| b = 56.055 | β = 90.92 |
| c = 54.051 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SHELXD | phasing |
| REFMAC | refinement |
| DENZO | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-04-07 Deposition Author(s): Patskovsky, Y., Ramagopal, U.A., Toro, R., Morano, C., Freeman, J., Chang, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-04-07
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2018-11-21
Changes: Data collection, Structure summary - Version 1.3: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2024-02-21
Changes: Data collection, Database references
