Download MendeleyStructure of putative NAD-dependent epimerase/dehydratase from methylobacillus flagellatus
Ramagopal, U.A., Morano, C., Burley, S.K., Almo, S.C.To be published.
3GPI
Structure of putative NAD-dependent epimerase/dehydratase from methylobacillus flagellatus
- PDB DOI: https://doi.org/10.2210/pdb3GPI/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Methylobacillus flagellatus KT
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-03-23 Released: 2009-04-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.44 Å
- R-Value Free: 0.226
- R-Value Work: 0.192
- R-Value Observed: 0.193
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| NAD-dependent epimerase/dehydratase | 286 | Methylobacillus flagellatus KT | Mutation(s): 0 Gene Names: Mfla_2045 |  | |
UniProt | |||||
Find proteins for Q1GZM5 (Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875)) Explore Q1GZM5 Go to UniProtKB: Q1GZM5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q1GZM5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | B [auth A], C [auth A], D [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.44 Å
- R-Value Free: 0.226
- R-Value Work: 0.192
- R-Value Observed: 0.193
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 35.574 | α = 90 |
| b = 68.892 | β = 90 |
| c = 96.141 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| CBASS | data collection |
| HKL-2000 | data reduction |
| SHELXE | model building |
| SHELXD | phasing |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2009-04-21 Deposition Author(s): Ramagopal, U.A., Morano, C., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-04-21
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2024-02-21
Changes: Data collection, Database references
