Download MendeleyCrystal structure of nicotinate-nucleotide pyrophosphorylase from Burkholderi pseudomallei
Seattle Structural Genomics Center for Infectious Disease (SSGCID)To be published.
3GNN
Crystal structure of nicotinate-nucleotide pyrophosphorylase from Burkholderi pseudomallei
- PDB DOI: https://doi.org/10.2210/pdb3GNN/pdb
- Classification: TRANSFERASE
- Organism(s): Burkholderia pseudomallei 1710b, unidentified
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-03-17 Released: 2009-03-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.273
- R-Value Work: 0.214
- R-Value Observed: 0.217
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| nicotinate-nucleotide diphosphorylase (carboxylating) | 298 | Burkholderia pseudomallei 1710b | Mutation(s): 0 Gene Names: nadC, BURPS1710b_1132 EC: 2.4.2.19 |  | |
UniProt | |||||
Find proteins for Q3JV59 (Burkholderia pseudomallei (strain 1710b)) Explore Q3JV59 Go to UniProtKB: Q3JV59 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q3JV59 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Unknown Peptide | C [auth D], D [auth E] | 4 | unidentified | Mutation(s): 0 |  |
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.273
- R-Value Work: 0.214
- R-Value Observed: 0.217
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 160.978 | α = 90 |
| b = 57.414 | β = 106.74 |
| c = 66.243 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-03-31 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2009-03-31
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2024-02-21
Changes: Data collection, Database references, Derived calculations, Source and taxonomy, Structure summary
