Download MendeleyThe crystal structure of the protein with unknown function from Methanocaldococcus jannaschii
Zhang, R., Hatzos, C., Freeman, L., Joachimiak, A.To be published.
3GMI
Crystal structure of a protein of unknown function from Methanocaldococcus jannaschii
- PDB DOI: https://doi.org/10.2210/pdb3GMI/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Methanocaldococcus jannaschii DSM 2661
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-03-13 Released: 2009-05-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.91 Å
- R-Value Free: 0.209
- R-Value Work: 0.174
- R-Value Observed: 0.176
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| UPF0348 protein MJ0951 | 357 | Methanocaldococcus jannaschii DSM 2661 | Mutation(s): 0 Gene Names: GI:1591618, MJ0951 |  | |
UniProt | |||||
Find proteins for Q58361 (Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)) Explore Q58361 Go to UniProtKB: Q58361 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q58361 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MLI Query on MLI | B [auth A] | MALONATE ION C3 H2 O4 OFOBLEOULBTSOW-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.91 Å
- R-Value Free: 0.209
- R-Value Work: 0.174
- R-Value Observed: 0.176
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 70.935 | α = 90 |
| b = 73.988 | β = 90 |
| c = 85.024 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | phasing |
| SOLVE | phasing |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-05-12 Deposition Author(s): Zhang, R., Hatzos, C., Freeman, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-05-12
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description
