Download MendeleyThe crystal structure of a probable spermidine synthase from Corynebacterium glutamicum ATCC 13032.
Tan, K., Li, H., Freeman, L., Joachimiak, A.To be published.
3GJY
Crystal structure of a probable spermidine synthase from Corynebacterium glutamicum ATCC 13032
- PDB DOI: https://doi.org/10.2210/pdb3GJY/pdb
- Classification: TRANSFERASE
- Organism(s): Corynebacterium glutamicum ATCC 13032
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-03-09 Released: 2009-03-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.47 Å
- R-Value Free: 0.192
- R-Value Work: 0.157
- R-Value Observed: 0.159
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Spermidine synthase | 317 | Corynebacterium glutamicum ATCC 13032 | Mutation(s): 0 Gene Names: Cgl1237, cg1394 |  | |
UniProt | |||||
Find proteins for Q8NR27 (Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025)) Explore Q8NR27 Go to UniProtKB: Q8NR27 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8NR27 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FMT Query on FMT | B [auth A] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.47 Å
- R-Value Free: 0.192
- R-Value Work: 0.157
- R-Value Observed: 0.159
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 52.909 | α = 90 |
| b = 65.009 | β = 90 |
| c = 87.308 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | model building |
| ARP/wARP | model building |
| HKL-3000 | phasing |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
Entry History
Deposition Data
- Released Date: 2009-03-24 Deposition Author(s): Tan, K., Li, H., Freeman, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-03-24
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance
