Download MendeleyCrystal structure of secreted protein of unknown function (DUF1311) (NP_742474.1) from Pseudomonas putida KT2440 at 1.85 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3GI7
Crystal structure of a duf1311 family protein (pp0307) from pseudomonas putida kt2440 at 1.85 A resolution
- PDB DOI: https://doi.org/10.2210/pdb3GI7/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Pseudomonas putida KT2440
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-03-05 Released: 2009-03-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.199
- R-Value Work: 0.178
- R-Value Observed: 0.179
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Secreted protein of unknown function DUF1311 | 122 | Pseudomonas putida KT2440 | Mutation(s): 0 Gene Names: NP_742474.1, PP0307, PP_0307 |  | |
UniProt | |||||
Find proteins for Q88R27 (Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)) Explore Q88R27 Go to UniProtKB: Q88R27 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q88R27 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | D [auth A], E [auth A], G [auth B], H [auth B], I [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| UNL Query on UNL | C [auth A], F [auth B] | Unknown ligand QAOWNCQODCNURD-UHFFFAOYSA-L | |||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.199
- R-Value Work: 0.178
- R-Value Observed: 0.179
- Space Group: P 41 21 2
- Diffraction Data: https://doi.org/10.18430/M33GI7
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 100.027 | α = 90 |
| b = 100.027 | β = 90 |
| c = 58.343 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PHENIX | refinement |
| SHELX | phasing |
| MolProbity | model building |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| MOSFLM | data reduction |
| SHELXD | phasing |
| autoSHARP | phasing |
Entry History
Deposition Data
- Released Date: 2009-03-31 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-03-31
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2019-07-24
Changes: Data collection, Derived calculations, Refinement description - Version 1.4: 2023-02-01
Changes: Database references, Derived calculations
