3GHM
Crystal structure of the exosite-containing fragment of human ADAMTS13 (form-1)
- PDB DOI: https://doi.org/10.2210/pdb3GHM/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Cricetulus griseus
- Mutation(s): Yes 
- Deposited: 2009-03-04 Released: 2009-10-27 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.289 
- R-Value Work: 0.243 
- R-Value Observed: 0.243 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
A disintegrin and metalloproteinase with thrombospondin motifs 13 | 410 | Homo sapiens | Mutation(s): 1  Gene Names: ADAMTS13 EC: 3.4.24 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q76LX8 (Homo sapiens) Explore Q76LX8  Go to UniProtKB:  Q76LX8 | |||||
PHAROS:  Q76LX8 GTEx:  ENSG00000160323  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q76LX8 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | D [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.60 Å
- R-Value Free: 0.289 
- R-Value Work: 0.243 
- R-Value Observed: 0.243 
- Space Group: C 1 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 152.667 | α = 90 |
b = 52.914 | β = 111.35 |
c = 76.218 | γ = 90 |
Software Name | Purpose |
---|---|
ADSC | data collection |
SOLVE | phasing |
CNS | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
Entry History 
Deposition Data
- Released Date: 2009-10-27  Deposition Author(s): Akiyama, M., Takeda, S., Kokame, K., Takagi, J., Miyata, T.
Revision History (Full details and data files)
- Version 1.0: 2009-10-27
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary - Version 2.1: 2021-11-10
Changes: Database references, Structure summary