3GAS

Crystal Structure of Helicobacter pylori Heme Oxygenase Hugz in Complex with Heme

PDB DOI: https://doi.org/10.2210/pdb3GAS/pdb

Classification: OXIDOREDUCTASE
Organism(s): Helicobacter pylori NCTC 11639
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-02-18 Released: 2010-02-23
Deposition Author(s): Jiang, F., Hu, Y.L., Guo, Y., Guo, G., Zou, Q.M., Wang, D.C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.222
R-Value Work: 0.192

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of Helicobacter pylori Heme Oxygenase Hugz in Complex with Heme

Jiang, F., Hu, Y.L., Guo, Y., Guo, G., Zou, Q.M., Wang, D.C.

To be published.

Macromolecule Content

Total Structure Weight: 184.5 kDa
Atom Count: 13,497
Modelled Residue Count: 1,484
Deposited Residue Count: 1,554
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
heme oxygenase	A, B, C, D, E A, B, C, D, E, F	259	Helicobacter pylori NCTC 11639	Mutation(s): 0 Gene Names: HugZ EC: 1.14.99.3
UniProt
Find proteins for C0LU01 (Helicobacter pylori) Explore C0LU01 Go to UniProtKB: C0LU01
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	C0LU01
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
HEM Query on HEM Download Ideal Coordinates CCD File SDF format, chain CA [auth E] SDF format, chain G [auth A] SDF format, chain GA [auth F] SDF format, chain L [auth B] SDF format, chain S [auth C] SDF format, chain X [auth D] MOL2 format, chain CA [auth E] MOL2 format, chain G [auth A] MOL2 format, chain GA [auth F] MOL2 format, chain L [auth B] MOL2 format, chain S [auth C] MOL2 format, chain X [auth D]	CA [auth E] G [auth A] GA [auth F] L [auth B] S [auth C] CA [auth E], G [auth A], GA [auth F], L [auth B], S [auth C], X [auth D]	PROTOPORPHYRIN IX CONTAINING FE C₃₄ H₃₂ Fe N₄ O₄ KABFMIBPWCXCRK-RGGAHWMASA-L		Interactions Focus chain CA [auth E] Focus chain G [auth A] Focus chain GA [auth F] Focus chain L [auth B] Focus chain S [auth C] Focus chain X [auth D] Interactions & Density Focus chain CA [auth E] Focus chain G [auth A] Focus chain GA [auth F] Focus chain L [auth B] Focus chain S [auth C] Focus chain X [auth D]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain K [auth A] SDF format, chain AA [auth D] SDF format, chain BA [auth D] SDF format, chain EA [auth E] SDF format, chain FA [auth E] SDF format, chain I [auth A] SDF format, chain IA [auth F] SDF format, chain J [auth A] SDF format, chain JA [auth F] SDF format, chain KA [auth F] SDF format, chain LA [auth F] SDF format, chain MA [auth F] SDF format, chain N [auth B] SDF format, chain NA [auth F] SDF format, chain O [auth B] SDF format, chain P [auth B] SDF format, chain Q [auth B] SDF format, chain R [auth B] SDF format, chain U [auth C] SDF format, chain V [auth C] SDF format, chain W [auth C] SDF format, chain Z [auth D] MOL2 format, chain K [auth A] MOL2 format, chain AA [auth D] MOL2 format, chain BA [auth D] MOL2 format, chain EA [auth E] MOL2 format, chain FA [auth E] MOL2 format, chain I [auth A] MOL2 format, chain IA [auth F] MOL2 format, chain J [auth A] MOL2 format, chain JA [auth F] MOL2 format, chain KA [auth F] MOL2 format, chain LA [auth F] MOL2 format, chain MA [auth F] MOL2 format, chain N [auth B] MOL2 format, chain NA [auth F] MOL2 format, chain O [auth B] MOL2 format, chain P [auth B] MOL2 format, chain Q [auth B] MOL2 format, chain R [auth B] MOL2 format, chain U [auth C] MOL2 format, chain V [auth C] MOL2 format, chain W [auth C] MOL2 format, chain Z [auth D]	AA [auth D] BA [auth D] EA [auth E] FA [auth E] I [auth A] AA [auth D], BA [auth D], EA [auth E], FA [auth E], I [auth A], IA [auth F], J [auth A], JA [auth F], K [auth A], KA [auth F], LA [auth F], MA [auth F], N [auth B], NA [auth F], O [auth B], P [auth B], Q [auth B], R [auth B], U [auth C], V [auth C], W [auth C], Z [auth D]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain AA [auth D] Focus chain BA [auth D] Focus chain EA [auth E] Focus chain FA [auth E] Focus chain I [auth A] Focus chain IA [auth F] Focus chain J [auth A] Focus chain JA [auth F] Focus chain K [auth A] Focus chain KA [auth F] Focus chain LA [auth F] Focus chain MA [auth F] Focus chain N [auth B] Focus chain NA [auth F] Focus chain O [auth B] Focus chain P [auth B] Focus chain Q [auth B] Focus chain R [auth B] Focus chain U [auth C] Focus chain V [auth C] Focus chain W [auth C] Focus chain Z [auth D] Interactions & Density Focus chain AA [auth D] Focus chain BA [auth D] Focus chain EA [auth E] Focus chain FA [auth E] Focus chain I [auth A] Focus chain IA [auth F] Focus chain J [auth A] Focus chain JA [auth F] Focus chain K [auth A] Focus chain KA [auth F] Focus chain LA [auth F] Focus chain MA [auth F] Focus chain N [auth B] Focus chain NA [auth F] Focus chain O [auth B] Focus chain P [auth B] Focus chain Q [auth B] Focus chain R [auth B] Focus chain U [auth C] Focus chain V [auth C] Focus chain W [auth C] Focus chain Z [auth D]
AZI Query on AZI Download Ideal Coordinates CCD File SDF format, chain DA [auth E] SDF format, chain H [auth A] SDF format, chain HA [auth F] SDF format, chain M [auth B] SDF format, chain T [auth C] SDF format, chain Y [auth D] MOL2 format, chain DA [auth E] MOL2 format, chain H [auth A] MOL2 format, chain HA [auth F] MOL2 format, chain M [auth B] MOL2 format, chain T [auth C] MOL2 format, chain Y [auth D]	DA [auth E] H [auth A] HA [auth F] M [auth B] T [auth C] DA [auth E], H [auth A], HA [auth F], M [auth B], T [auth C], Y [auth D]	AZIDE ION N₃ IVRMZWNICZWHMI-UHFFFAOYSA-N		Interactions Focus chain DA [auth E] Focus chain H [auth A] Focus chain HA [auth F] Focus chain M [auth B] Focus chain T [auth C] Focus chain Y [auth D] Interactions & Density Focus chain DA [auth E] Focus chain H [auth A] Focus chain HA [auth F] Focus chain M [auth B] Focus chain T [auth C] Focus chain Y [auth D]