Download MendeleyCrystal Structure of DNA Modification Methyltransferase Encoded within Prophage Cp-933R (E.coli)
Patskovsky, Y., Ramagopal, U.A., Toro, R., Gilmore, M., Iizuka, M., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3G7U
Crystal structure of putative DNA modification methyltransferase encoded within prophage Cp-933R (E.coli)
- PDB DOI: https://doi.org/10.2210/pdb3G7U/pdb
- Classification: TRANSFERASE
- Organism(s): Escherichia coli O157:H7 str. EDL933
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-02-10 Released: 2009-02-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.219
- R-Value Work: 0.183
- R-Value Observed: 0.184
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cytosine-specific methyltransferase | 376 | Escherichia coli O157:H7 str. EDL933 | Mutation(s): 0 Gene Names: ECs1953, Z2389 EC: 2.1.1.37 |  | |
UniProt | |||||
Find proteins for Q8X8S5 (Escherichia coli O157:H7) Explore Q8X8S5 Go to UniProtKB: Q8X8S5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8X8S5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth A], D [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| CL Query on CL | B [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.219
- R-Value Work: 0.183
- R-Value Observed: 0.184
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 79.436 | α = 90 |
| b = 79.436 | β = 90 |
| c = 126.539 | γ = 120 |
| Software Name | Purpose |
|---|---|
| MAR345 | data collection |
| SHELXD | phasing |
| REFMAC | refinement |
| DENZO | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-02-24 Deposition Author(s): Patskovsky, Y., Ramagopal, U.A., Toro, R., Gilmore, M., Iizuka, M., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-02-24
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2018-11-21
Changes: Data collection, Structure summary - Version 1.4: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2024-02-21
Changes: Data collection, Database references
