Download MendeleyCrystal Structure of S-Adenosylmethionine Dependent Methyltransferase from Listeria Monocytogenes
Patskovsky, Y., Sampathkumar, P., Gilmore, M., Miller, S., Koss, J., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3G5L
Crystal structure of putative S-adenosylmethionine dependent methyltransferase from Listeria monocytogenes
- PDB DOI: https://doi.org/10.2210/pdb3G5L/pdb
- Classification: TRANSFERASE
- Organism(s): Listeria monocytogenes serotype 4b str. F2365
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-02-05 Released: 2009-02-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.276
- R-Value Work: 0.190
- R-Value Observed: 0.192
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative S-adenosylmethionine dependent methyltransferase | 253 | Listeria monocytogenes serotype 4b str. F2365 | Mutation(s): 0 Gene Names: LMOf2365_1325 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | C [auth A], D [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.35 Å
- R-Value Free: 0.276
- R-Value Work: 0.190
- R-Value Observed: 0.192
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 56.812 | α = 90 |
| b = 92.532 | β = 90 |
| c = 99.973 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MAR345 | data collection |
| SHELXD | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-02-17 Deposition Author(s): Patskovsky, Y., Sampathkumar, P., Gilmore, M., Miller, S., Koss, J., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-02-17
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2018-11-21
Changes: Data collection, Structure summary - Version 1.4: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2024-02-21
Changes: Data collection, Database references
