Download MendeleyThe 1A structure of YmfM, a putative DNA-binding membrane protein from Staphylococcus aureus
Xu, L., Sedelnikova, S.E., Baker, P.J., Rice, D.W.To be published.
3FYM
The 1A structure of YmfM, a putative DNA-binding membrane protein from Staphylococcus aureus
- PDB DOI: https://doi.org/10.2210/pdb3FYM/pdb
- Classification: DNA BINDING PROTEIN
- Organism(s): Staphylococcus aureus subsp. aureus Mu50
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-01-22 Released: 2010-02-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.00 Å
- R-Value Free: 0.140
- R-Value Work: 0.110
- R-Value Observed: 0.110
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative uncharacterized protein | 130 | Staphylococcus aureus subsp. aureus Mu50 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A0A0H3JZ73 (Staphylococcus aureus (strain Mu50 / ATCC 700699)) Explore A0A0H3JZ73 Go to UniProtKB: A0A0H3JZ73 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H3JZ73 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.00 Å
- R-Value Free: 0.140
- R-Value Work: 0.110
- R-Value Observed: 0.110
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 45.456 | α = 90 |
| b = 45.456 | β = 90 |
| c = 72.903 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SHELX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data collection |
| MOSFLM | data reduction |
| SCALA | data scaling |
| SHELXS | phasing |
| SHELXL | refinement |
Entry History
Deposition Data
- Released Date: 2010-02-09 Deposition Author(s): Xu, L., Sedelnikova, S.E., Baker, P.J., Rice, D.W.
Revision History (Full details and data files)
- Version 1.0: 2010-02-09
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2024-03-20
Changes: Data collection, Database references, Derived calculations
