Download Mendeleythiol-disulfide oxidoreductase from Bacteroides fragilis NCTC 9343
Duke, N.E.C., Freeman, L., Tesar, C., Joachimiak, A.To be published.
3FKF
thiol-disulfide oxidoreductase from Bacteroides fragilis NCTC 9343
- PDB DOI: https://doi.org/10.2210/pdb3FKF/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Bacteroides fragilis NCTC 9343
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-12-16 Released: 2009-01-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.258
- R-Value Work: 0.208
- R-Value Observed: 0.210
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| thiol-disulfide oxidoreductase | 148 | Bacteroides fragilis NCTC 9343 | Mutation(s): 0 EC: 1.8.4.7 |  | |
UniProt | |||||
Find proteins for Q5L7K1 (Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / NCTC 9343 / Onslow)) Explore Q5L7K1 Go to UniProtKB: Q5L7K1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5L7K1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACT Query on ACT | E [auth A], F [auth B], G [auth C], H [auth D] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.258
- R-Value Work: 0.208
- R-Value Observed: 0.210
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 123.67 | α = 90 |
| b = 125.947 | β = 90 |
| c = 56.951 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | phasing |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-01-20 Deposition Author(s): Duke, N.E.C., Freeman, L., Tesar, C., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-01-20
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
