Download MendeleyCrystal structure of malate dehydrogenase from Porphyromonas gingivalis
Bonanno, J.B., Freeman, J., Bain, K.T., Miller, S., Romero, R., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3FI9
Crystal structure of malate dehydrogenase from Porphyromonas gingivalis
- PDB DOI: https://doi.org/10.2210/pdb3FI9/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Porphyromonas gingivalis ATCC 33277
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-12-11 Released: 2008-12-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.295
- R-Value Work: 0.252
- R-Value Observed: 0.254
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Malate dehydrogenase | 343 | Porphyromonas gingivalis ATCC 33277 | Mutation(s): 0 Gene Names: PGN_1880 |  | |
UniProt | |||||
Find proteins for B2RM04 (Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561)) Explore B2RM04 Go to UniProtKB: B2RM04 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B2RM04 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.295
- R-Value Work: 0.252
- R-Value Observed: 0.254
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 71.385 | α = 90 |
| b = 74.133 | β = 90 |
| c = 135.296 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| MOSFLM | data reduction |
| SHELXCD | phasing |
| SHELXE | model building |
Entry History
Deposition Data
- Released Date: 2008-12-23 Deposition Author(s): Bonanno, J.B., Freeman, J., Bain, K.T., Miller, S., Romero, R., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2008-12-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2018-11-21
Changes: Data collection, Structure summary - Version 1.4: 2021-02-10
Changes: Database references, Structure summary - Version 1.5: 2024-02-21
Changes: Data collection, Database references
