Download MendeleyCrystal Structure of DsbA-like thioredoxin domain VF_A0457 from Vibrio fischeri
Kim, Y., Sather, A., Shackelford, G., Joachimiak, A.To be published.
3FEU
Crystal Structure of DsbA-like thioredoxin domain VF_A0457 from Vibrio fischeri
- PDB DOI: https://doi.org/10.2210/pdb3FEU/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Aliivibrio fischeri ES114
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-12-01 Released: 2009-01-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 Å
- R-Value Free: 0.241
- R-Value Work: 0.188
- R-Value Observed: 0.191
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| putative Lipoprotein | 185 | Aliivibrio fischeri ES114 | Mutation(s): 0 Gene Names: VF_A0457 |  | |
UniProt | |||||
Find proteins for Q5E0B9 (Aliivibrio fischeri (strain ATCC 700601 / ES114)) Explore Q5E0B9 Go to UniProtKB: Q5E0B9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5E0B9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | B [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 Å
- R-Value Free: 0.241
- R-Value Work: 0.188
- R-Value Observed: 0.191
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 47.807 | α = 90 |
| b = 55.737 | β = 90 |
| c = 62.521 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | data collection |
| HKL-3000 | phasing |
| MLPHARE | phasing |
| DM | model building |
| SHELXD | phasing |
| RESOLVE | model building |
| Coot | model building |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2009-01-20 Deposition Author(s): Kim, Y., Sather, A., Shackelford, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-01-20
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Source and taxonomy, Version format compliance - Version 1.2: 2023-12-27
Changes: Data collection, Database references, Derived calculations
