Download MendeleyThe crystal structure of the oxidoreductase from Agrobacterium tumefaciens
Zhang, R., Xu, X., Zheng, H., Savchenko, A., Edwards, A., Joachimiak, A.To be published.
3FBS
The crystal structure of the oxidoreductase from Agrobacterium tumefaciens
- PDB DOI: https://doi.org/10.2210/pdb3FBS/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Agrobacterium fabrum str. C58
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-11-19 Released: 2008-12-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.236
- R-Value Work: 0.188
- R-Value Observed: 0.190
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Oxidoreductase | 297 | Agrobacterium fabrum str. C58 | Mutation(s): 0 Gene Names: AGR_C_405, Atu0238, GI:17934154 |  | |
UniProt | |||||
Find proteins for A9CKI7 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore A9CKI7 Go to UniProtKB: A9CKI7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A9CKI7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FAD Query on FAD | C [auth A], G [auth B] | FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N |  | ||
| SO4 Query on SO4 | D [auth A], E [auth A], H [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| MG Query on MG | F [auth A], I [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 Å
- R-Value Free: 0.236
- R-Value Work: 0.188
- R-Value Observed: 0.190
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 95.19 | α = 90 |
| b = 95.19 | β = 90 |
| c = 149.237 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | phasing |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2008-12-23 Deposition Author(s): Zhang, R., Xu, X., Zheng, H., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2008-12-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Source and taxonomy, Version format compliance - Version 1.2: 2023-12-27
Changes: Data collection, Database references, Derived calculations
