Download MendeleyCrystal structure of PhnF, a GntR-family transcription regulator in Mycobacterium smegmatis
Busby, J.N., Gebhard, S., Cook, G.M., Lott, S.J., Baker, E.N., Money, V.A.To be published.
3F8M
Crystal Structure of PhnF from Mycobacterium smegmatis
- PDB DOI: https://doi.org/10.2210/pdb3F8M/pdb
- Classification: TRANSCRIPTION
- Organism(s): Mycolicibacterium smegmatis MC2 155
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-11-12 Released: 2009-11-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.248
- R-Value Work: 0.213
- R-Value Observed: 0.215
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| GntR-family protein transcriptional regulator | 248 | Mycolicibacterium smegmatis MC2 155 | Mutation(s): 0 Gene Names: MSMEG_0650 |  | |
UniProt | |||||
Find proteins for A0QQ72 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore A0QQ72 Go to UniProtKB: A0QQ72 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0QQ72 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth A], D [auth A], E [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.248
- R-Value Work: 0.213
- R-Value Observed: 0.215
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.501 | α = 90 |
| b = 76.954 | β = 113.48 |
| c = 66.897 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MAR345dtb | data collection |
Entry History
Deposition Data
- Released Date: 2009-11-17 Deposition Author(s): Busby, J.N., Gebhard, S., Cook, G.M., Lott, S.J., Baker, E.N., Money, V.A.
Revision History (Full details and data files)
- Version 1.0: 2009-11-17
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
