Download MendeleyXRE-family like protein from Pseudomonas syringae pv. tomato str. DC3000
Petrova, T., Cuff, M., Shackleford, G., Gu, M., Joachimiak, A.To be published.
3F6W
XRE-family like protein from Pseudomonas syringae pv. tomato str. DC3000
- PDB DOI: https://doi.org/10.2210/pdb3F6W/pdb
- Classification: DNA BINDING PROTEIN
- Organism(s): Pseudomonas syringae pv. tomato str. DC3000
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-11-06 Released: 2008-12-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.248
- R-Value Work: 0.191
- R-Value Observed: 0.193
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| XRE-family like protein | 83 | Pseudomonas syringae pv. tomato str. DC3000 | Mutation(s): 0 Gene Names: PSPTO0717, PSPTO_0717 |  | |
UniProt | |||||
Find proteins for Q889N2 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)) Explore Q889N2 Go to UniProtKB: Q889N2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q889N2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BTB Query on BTB | F [auth A] | 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C8 H19 N O5 OWMVSZAMULFTJU-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D, E | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.248
- R-Value Work: 0.191
- R-Value Observed: 0.193
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 90.196 | α = 90 |
| b = 48.306 | β = 98 |
| c = 111.424 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data collection |
| SHELXD | phasing |
| SHELXE | model building |
| MLPHARE | phasing |
| SOLVE | phasing |
| RESOLVE | model building |
| ARP/wARP | model building |
| CCP4 | model building |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| RESOLVE | phasing |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2008-12-02 Deposition Author(s): Petrova, T., Cuff, M., Shackleford, G., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2008-12-02
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2017-10-25
Changes: Advisory, Refinement description - Version 1.3: 2023-12-27
Changes: Advisory, Data collection, Database references, Derived calculations
