Download MendeleyCrystal structure of the C-terminal domain of uncharacterized protein from Bacteroides fragilis NCTC 9343
Nocek, B., Tesar, C., Cobb, G., Joachimiak, A.To be published.
3EUR
Crystal structure of the C-terminal domain of uncharacterized protein from Bacteroides fragilis NCTC 9343
- PDB DOI: https://doi.org/10.2210/pdb3EUR/pdb
- Classification: structural genomics, unknown function
- Organism(s): Bacteroides fragilis NCTC 9343
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-10-10 Released: 2008-12-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.170
- R-Value Work: 0.139
- R-Value Observed: 0.140
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| uncharacterized protein | 142 | Bacteroides fragilis NCTC 9343 | Mutation(s): 0 Gene Names: BF1587 |  | |
UniProt | |||||
Find proteins for A0A380Z3E8 (Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / NCTC 9343 / Onslow)) Explore A0A380Z3E8 Go to UniProtKB: A0A380Z3E8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A380Z3E8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 Å
- R-Value Free: 0.170
- R-Value Work: 0.139
- R-Value Observed: 0.140
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 33.145 | α = 90 |
| b = 43.428 | β = 90 |
| c = 98.692 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | phasing |
| SHELX | model building |
| Coot | model building |
| MLPHARE | phasing |
| PHENIX | model building |
| REFMAC | refinement |
| ARP/wARP | model building |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| SHELX | phasing |
| PHENIX | phasing |
| REFMAC | phasing |
Entry History
Deposition Data
- Released Date: 2008-12-02 Deposition Author(s): Nocek, B., Tesar, C., Cobb, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2008-12-02
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2023-12-27
Changes: Data collection, Database references, Derived calculations
