Download MendeleyCrystal structure of thioredoxin from Aeropyrum pernix
Bonanno, J.B., Dickey, M., Bain, K.T., Miller, S., Sampathkumar, P., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3EMX
Crystal structure of thioredoxin from Aeropyrum pernix
- PDB DOI: https://doi.org/10.2210/pdb3EMX/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Aeropyrum pernix
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-09-25 Released: 2008-10-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.254
- R-Value Work: 0.195
- R-Value Observed: 0.198
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thioredoxin | 135 | Aeropyrum pernix | Mutation(s): 0 Gene Names: APE0641, APE_0641 |  | |
UniProt | |||||
Find proteins for Q9YED4 (Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)) Explore Q9YED4 Go to UniProtKB: Q9YED4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9YED4 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.254
- R-Value Work: 0.195
- R-Value Observed: 0.198
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 52.229 | α = 90 |
| b = 54.852 | β = 90 |
| c = 159.342 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| DENZO | data reduction |
| SHELXCD | phasing |
| SHELXE | model building |
Entry History
Deposition Data
- Released Date: 2008-10-14 Deposition Author(s): Bonanno, J.B., Dickey, M., Bain, K.T., Miller, S., Sampathkumar, P., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2008-10-14
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2018-11-14
Changes: Data collection, Structure summary - Version 1.4: 2021-02-10
Changes: Database references, Structure summary - Version 1.5: 2024-02-21
Changes: Data collection, Database references
