Download MendeleyStructural investigation of a protozoan coproporphyrinogen iii oxidase
Larson, E.T., Merritt, E.A., Structural Genomics of Pathogenic Protozoa ConsortiumTo be published.
3EJO
Coproporphyrinogen III oxidase from Leishmania donovani
- PDB DOI: https://doi.org/10.2210/pdb3EJO/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Leishmania donovani
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-09-18 Released: 2008-10-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.267
- R-Value Work: 0.213
- R-Value Observed: 0.216
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Coproporphyrinogen III oxidase | 310 | Leishmania donovani | Mutation(s): 0 EC: 1.3.3.3 |  | |
UniProt | |||||
Find proteins for D0VX00 (Leishmania donovani) Explore D0VX00 Go to UniProtKB: D0VX00 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D0VX00 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACT Query on ACT | C [auth A], D [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.267
- R-Value Work: 0.213
- R-Value Observed: 0.216
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 53.067 | α = 86.63 |
| b = 53.991 | β = 77.77 |
| c = 65.565 | γ = 61.25 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| CrystalClear | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| REFMAC | phasing |
Entry History
Deposition Data
- Released Date: 2008-10-14 Deposition Author(s): Larson, E.T., Merritt, E.A., Medical Structural Genomics of Pathogenic Protozoa (MSGPP)
Revision History (Full details and data files)
- Version 1.0: 2008-10-14
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2018-01-24
Changes: Database references - Version 1.4: 2023-08-30
Changes: Data collection, Database references, Derived calculations, Refinement description
