Download MendeleyCrystal structure of putative Chitinase A from Streptomyces coelicolor
Vigdorovich, V., Ramagopal, U.A., Toro, R., Burley, S.K., Almo, S.C.To be published.
3EBV
Crystal structure of putative Chitinase A from Streptomyces coelicolor.
- PDB DOI: https://doi.org/10.2210/pdb3EBV/pdb
- Classification: structural genomics, unknown function
- Organism(s): Streptomyces coelicolor
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-08-28 Released: 2008-09-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.169
- R-Value Work: 0.156
- R-Value Observed: 0.157
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Chinitase A | 302 | Streptomyces coelicolor | Mutation(s): 0 Gene Names: SCO5003, SCK15.05c |  | |
UniProt | |||||
Find proteins for Q9Z9M9 (Streptomyces coelicolor) Explore Q9Z9M9 Go to UniProtKB: Q9Z9M9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9Z9M9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.169
- R-Value Work: 0.156
- R-Value Observed: 0.157
- Space Group: H 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 96.636 | α = 90 |
| b = 96.636 | β = 90 |
| c = 124.735 | γ = 120 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| CBASS | data collection |
| HKL-2000 | data reduction |
| SHELXD | phasing |
| SHELXE | model building |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2008-09-30 Deposition Author(s): Vigdorovich, V., Ramagopal, U.A., Toro, R., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2008-09-30
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2021-02-10
Changes: Database references, Derived calculations, Structure summary
