Download MendeleyCrystal structure of C-termianl domain of N-acetylglutamate synthase from Vibrio parahaemolyticus
Chang, C., Shackelford, G., Joachimiak, A.To be published.
3E0K
Crystal structure of C-termianl domain of N-acetylglutamate synthase from Vibrio parahaemolyticus
- PDB DOI: https://doi.org/10.2210/pdb3E0K/pdb
- Classification: TRANSFERASE
- Organism(s): Vibrio parahaemolyticus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-07-31 Released: 2008-08-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.52 Å
- R-Value Free: 0.254
- R-Value Work: 0.215
- R-Value Observed: 0.217
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Amino-acid acetyltransferase | 150 | Vibrio parahaemolyticus | Mutation(s): 0 Gene Names: argA, VP2371 EC: 2.3.1.1 |  | |
UniProt | |||||
Find proteins for Q87M87 (Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)) Explore Q87M87 Go to UniProtKB: Q87M87 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q87M87 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| EDO Query on EDO | C [auth A], D [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.52 Å
- R-Value Free: 0.254
- R-Value Work: 0.215
- R-Value Observed: 0.217
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.232 | α = 90 |
| b = 64.232 | β = 90 |
| c = 112.718 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2008-08-19 Deposition Author(s): Chang, C., Shackelford, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2008-08-19
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance
