Download MendeleyCrystal structure of a putative dehydrogenase from Xanthomonas campestris
Sampathkumar, P., Wasserman, S., Rutter, M., Hu, S., Bain, K., Rodgers, L., Atwell, S., Sauder, J.M., Burley, S.K.To be published.
3E03
Crystal structure of a putative dehydrogenase from Xanthomonas campestris
- PDB DOI: https://doi.org/10.2210/pdb3E03/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Xanthomonas campestris pv. campestris
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-07-30 Released: 2008-09-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.69 Å
- R-Value Free: 0.199
- R-Value Work: 0.161
- R-Value Observed: 0.162
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Short chain dehydrogenase | 274 | Xanthomonas campestris pv. campestris | Mutation(s): 0 Gene Names: XCC3285 |  | |
UniProt | |||||
Find proteins for Q8P5Q1 (Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)) Explore Q8P5Q1 Go to UniProtKB: Q8P5Q1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8P5Q1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.69 Å
- R-Value Free: 0.199
- R-Value Work: 0.161
- R-Value Observed: 0.162
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 251.286 | α = 90 |
| b = 41.351 | β = 96.62 |
| c = 73.323 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
| SCALA | data scaling |
| SHELXS | phasing |
Entry History
Deposition Data
- Released Date: 2008-09-16 Deposition Author(s): Sampathkumar, P., Wasserman, S., Rutter, M., Hu, S., Bain, K., Rodgers, L., Atwell, S., Sauder, J.M., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2008-09-16
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2018-11-14
Changes: Data collection, Structure summary - Version 1.3: 2021-02-10
Changes: Database references, Derived calculations, Structure summary
