Download MendeleyCrystal structure of an Oxidoreductase from Pseudomonas syringae
Eswaramoorthy, S., Mahmood, A., Burley, S.K., Swaminathan, S.To be published.
3DTY
Crystal structure of an Oxidoreductase from Pseudomonas syringae
- PDB DOI: https://doi.org/10.2210/pdb3DTY/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Pseudomonas syringae pv. tomato
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-07-16 Released: 2008-08-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.04 Å
- R-Value Free: 0.218
- R-Value Work: 0.193
- R-Value Observed: 0.193
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Oxidoreductase, Gfo/Idh/MocA family | A, B, C [auth D], D [auth E] | 398 | Pseudomonas syringae pv. tomato | Mutation(s): 0 Gene Names: PSPTO3019, PSPTO_3019 |  |
UniProt | |||||
Find proteins for Q880Y1 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)) Explore Q880Y1 Go to UniProtKB: Q880Y1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q880Y1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MG Query on MG | E [auth A], F [auth A], G [auth E], H [auth E] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C [auth D], D [auth E] | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.04 Å
- R-Value Free: 0.218
- R-Value Work: 0.193
- R-Value Observed: 0.193
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 94.281 | α = 90 |
| b = 80.93 | β = 93.63 |
| c = 110.544 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| SHELX | model building |
| CNS | refinement |
| DENZO | data reduction |
| HKL-2000 | data scaling |
| SHELX | phasing |
Entry History
Deposition Data
- Released Date: 2008-08-05 Deposition Author(s): Eswaramoorthy, S., Mahmood, A., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2008-08-05
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary
