Download MendeleyX-ray crystal structure of SPO1766 protein of unknown function from Silicibacter pomeroyi.
Osipiuk, J., Mulligan, R., Clancy, S., Joachimiak, A.To be published.
3DNX
SPO1766 protein of unknown function from Silicibacter pomeroyi.
- PDB DOI: https://doi.org/10.2210/pdb3DNX/pdb
- Classification: structural genomics, unknown function
- Organism(s): Ruegeria pomeroyi
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-07-02 Released: 2008-09-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.94 Å
- R-Value Free: 0.213
- R-Value Work: 0.172
- R-Value Observed: 0.174
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| uncharacterized protein SPO1766 | 153 | Ruegeria pomeroyi | Mutation(s): 0 Gene Names: SPO1766 |  | |
UniProt | |||||
Find proteins for Q5LSK1 (Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)) Explore Q5LSK1 Go to UniProtKB: Q5LSK1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5LSK1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NA Query on NA | B [auth A], C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.94 Å
- R-Value Free: 0.213
- R-Value Work: 0.172
- R-Value Observed: 0.174
- Space Group: P 41 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 59.892 | α = 90 |
| b = 59.892 | β = 90 |
| c = 99.868 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | phasing |
| SOLVE | phasing |
| RESOLVE | phasing |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2008-09-02 Deposition Author(s): Osipiuk, J., Mulligan, R., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2008-09-02
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description
