Download Mendeley1.6 A crystal structure of cytidine deaminase from Burkholderia pseudomallei
Seattle Structural Genomics Center for Infectious Disease (SSGCID)To be published.
3DMO
1.6 A crystal structure of cytidine deaminase from Burkholderia pseudomallei
- PDB DOI: https://doi.org/10.2210/pdb3DMO/pdb
- Classification: HYDROLASE
- Organism(s): Burkholderia pseudomallei
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-07-01 Released: 2008-07-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.224
- R-Value Work: 0.199
- R-Value Observed: 0.200
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cytidine deaminase | 138 | Burkholderia pseudomallei | Mutation(s): 0 Gene Names: cdd, BPSS1959 EC: 3.5.4.5 |  | |
UniProt | |||||
Find proteins for Q3JJN0 (Burkholderia pseudomallei (strain 1710b)) Explore Q3JJN0 Go to UniProtKB: Q3JJN0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q3JJN0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MRD Query on MRD | F [auth A], I [auth B], K [auth C], M [auth D] | (4R)-2-METHYLPENTANE-2,4-DIOL C6 H14 O2 SVTBMSDMJJWYQN-RXMQYKEDSA-N |  | ||
| PO4 Query on PO4 | H [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| ZN Query on ZN | E [auth A], G [auth B], J [auth C], L [auth D] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.224
- R-Value Work: 0.199
- R-Value Observed: 0.200
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 60.495 | α = 90 |
| b = 72.308 | β = 111.29 |
| c = 83.327 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2008-07-15 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2008-07-15
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2024-02-21
Changes: Data collection, Database references, Derived calculations
