Download MendeleyCrystal structure of a SAM dependent methyltransferase from Aquifex aeolicus
Agarwal, R., Burley, S.K., Swaminathan, S.To be published.
3DH0
Crystal structure of a SAM dependent methyltransferase from Aquifex aeolicus
- PDB DOI: https://doi.org/10.2210/pdb3DH0/pdb
- Classification: TRANSFERASE
- Organism(s): Aquifex aeolicus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-06-16 Released: 2008-07-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.72 Å
- R-Value Free: 0.296
- R-Value Work: 0.231
- R-Value Observed: 0.231
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SAM dependent methyltransferase | 219 | Aquifex aeolicus | Mutation(s): 0 Gene Names: aq_1457 |  | |
UniProt | |||||
Find proteins for O67440 (Aquifex aeolicus (strain VF5)) Explore O67440 Go to UniProtKB: O67440 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O67440 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SAM Query on SAM | C [auth A], D [auth B] | S-ADENOSYLMETHIONINE C15 H22 N6 O5 S MEFKEPWMEQBLKI-FCKMPRQPSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.72 Å
- R-Value Free: 0.296
- R-Value Work: 0.231
- R-Value Observed: 0.231
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 66.436 | α = 90 |
| b = 42.902 | β = 106.74 |
| c = 84.253 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| CBASS | data collection |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| SOLVE | phasing |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2008-07-15 Deposition Author(s): Agarwal, R., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2008-07-15
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.3: 2024-02-21
Changes: Data collection, Database references
