Download MendeleyStructure of the Elastase of Pseudomonas aeruginosa Complexed with Phosphoramidon
Overgaard, M.T., McKay, D.B.To be published.
3DBK
Pseudomonas aeruginosa elastase with phosphoramidon
- PDB DOI: https://doi.org/10.2210/pdb3DBK/pdb
- Classification: HYDROLASE
- Organism(s): Pseudomonas aeruginosa
- Mutation(s): No
- Deposited: 2008-06-01 Released: 2009-07-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.203
- R-Value Work: 0.183
- R-Value Observed: 0.183
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Elastase | 301 | Pseudomonas aeruginosa | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P14756 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore P14756 Go to UniProtKB: P14756 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P14756 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| RDF Query on RDF | G [auth A] | N-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L-LEUCYL-L-TRYPTOPHAN C23 H34 N3 O10 P ZPHBZEQOLSRPAK-XLCYBJAPSA-N |  | ||
| SO4 Query on SO4 | D [auth A], E [auth A], F [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CA Query on CA | C [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 5 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_000638 (RDF) Query on PRD_000638 | G [auth A] | PHOSPHORAMIDON | Glycopeptide / Enzyme inhibitor | | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.203
- R-Value Work: 0.183
- R-Value Observed: 0.183
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 44 | α = 90 |
| b = 50.75 | β = 90 |
| c = 121.51 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| PDB_EXTRACT | data extraction |
| ADSC | data collection |
| MOSFLM | data reduction |
| SCALA | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2009-07-07 Deposition Author(s): McKay, D.B., Overgaard, M.T.
Revision History (Full details and data files)
- Version 1.0: 2009-07-07
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2012-12-12
Changes: Other - Version 1.3: 2023-08-30
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.4: 2024-03-13
Changes: Source and taxonomy
