3D7J

SCO6650, a 6-pyruvoyltetrahydropterin synthase homolog from Streptomyces coelicolor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.207 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of a 6-pyruvoyltetrahydropterin synthase homolog from Streptomyces coelicolor.

Spoonamore, J.E.Roberts, S.A.Heroux, A.Bandarian, V.

(2008) Acta Crystallogr Sect F Struct Biol Cryst Commun 64: 875-879

  • DOI: https://doi.org/10.1107/S1744309108027048
  • Primary Citation of Related Structures:  
    3D7J

  • PubMed Abstract: 

    The X-ray crystal structure of the 6-pyruvoyltetrahydropterin synthase (PTPS) homolog from Streptomyces coelicolor, SCO 6650, was solved at 1.5 A resolution. SCO 6650 forms a hexameric T-fold that closely resembles other PTPS proteins. The biological activity of SCO 6650 is unknown, but it lacks both a required active-site zinc metal ion and the essential catalytic triad and does not catalyze the PTPS reaction. However, SCO 6650 maintains active-site residues consistent with binding a pterin-like substrate.


  • Organizational Affiliation

    Department of Biochemistry, University of Arizona, Tucson, AZ 85721, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein SCO6650
A, B, C, D, E
A, B, C, D, E, F
152Streptomyces coelicolorMutation(s): 0 
Gene Names: SCO6650
UniProt
Find proteins for O86696 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
Explore O86696 
Go to UniProtKB:  O86696
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO86696
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.207 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 77.4α = 90
b = 88β = 90
c = 120.9γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
SOLVEphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-10-21
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2012-03-28
    Changes: Database references