3D4C
ZP-N domain of mammalian sperm receptor ZP3 (crystal form I)
- PDB DOI: https://doi.org/10.2210/pdb3D4C/pdb
- Classification: CELL ADHESION
- Organism(s): Escherichia coli K-12, Mus musculus
- Expression System: Escherichia coli
- Mutation(s): Yes 
- Deposited: 2008-05-14 Released: 2008-12-02 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.227 
- R-Value Work: 0.190 
- R-Value Observed: 0.192 
wwPDB Validation   3D Report Full Report
This is version 2.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Maltose-binding periplasmic protein, LINKER, Zona pellucida protein 3 | 481 | Escherichia coli K-12, Mus musculus This entity is chimeric | Mutation(s): 5  Gene Names: Zp3, Zp-3, Zpc | ||
UniProt | |||||
Find proteins for P0AEX9 (Escherichia coli (strain K12)) Explore P0AEX9  Go to UniProtKB:  P0AEX9 | |||||
Find proteins for P10761 (Mus musculus) Explore P10761  Go to UniProtKB:  P10761 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Groups | P10761P0AEX9 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CD Query on CD | C [auth A] D [auth A] E [auth A] F [auth A] G [auth A] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900001 Query on PRD_900001 | B | alpha-maltose | Oligosaccharide / Nutrient |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.227 
- R-Value Work: 0.190 
- R-Value Observed: 0.192 
- Space Group: I 2 2 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 93.04 | α = 90 |
b = 95.12 | β = 90 |
c = 141.7 | γ = 90 |
Software Name | Purpose |
---|---|
PHASER | phasing |
MxCuBE | data collection |
XDS | data reduction |
XDS | data scaling |
PHENIX | refinement |
Entry History 
Deposition Data
- Released Date: 2008-12-02  Deposition Author(s): Jovine, L., Monne, M.
Revision History (Full details and data files)
- Version 1.0: 2008-12-02
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2016-02-17
Changes: Other - Version 1.3: 2017-06-28
Changes: Source and taxonomy - Version 1.4: 2017-08-23
Changes: Data collection - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Structure summary - Version 2.1: 2021-11-10
Changes: Database references, Structure summary - Version 2.2: 2023-11-01
Changes: Data collection, Refinement description