Download MendeleyCrystal structure of two-component response regulator, LuxR family, from Aurantimonas sp. SI85-9A1.
Malashkevich, V.N., Toro, R., Wasserman, S.R., Meyer, A., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3CZ5
Crystal structure of two-component response regulator, LuxR family, from Aurantimonas sp. SI85-9A1
- PDB DOI: https://doi.org/10.2210/pdb3CZ5/pdb
- Classification: TRANSCRIPTION REGULATOR
- Organism(s): Aurantimonas manganoxydans SI85-9A1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-04-28 Released: 2008-05-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.275
- R-Value Work: 0.196
- R-Value Observed: 0.200
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Two-component response regulator, LuxR family | 153 | Aurantimonas manganoxydans SI85-9A1 | Mutation(s): 0 Gene Names: SI859A1_03491 |  | |
UniProt | |||||
Find proteins for Q1YEP2 (Aurantimonas manganoxydans (strain ATCC BAA-1229 / DSM 21871 / SI85-9A1)) Explore Q1YEP2 Go to UniProtKB: Q1YEP2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q1YEP2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | E [auth A], F [auth A], G [auth B], H [auth C] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.70 Å
- R-Value Free: 0.275
- R-Value Work: 0.196
- R-Value Observed: 0.200
- Space Group: P 42 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 126.61 | α = 90 |
| b = 126.61 | β = 90 |
| c = 91.68 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| SHELX | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| HKL-2000 | data reduction |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2008-05-06 Deposition Author(s): Malashkevich, V.N., Toro, R., Wasserman, S.R., Meyer, A., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2008-05-06
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Source and taxonomy, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2018-11-14
Changes: Data collection, Derived calculations, Structure summary - Version 1.4: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2024-02-21
Changes: Data collection, Database references
