Download MendeleyCrystal structure of a periplasmic putative metal binding protein.
Agarwal, R., Burley, S.K., Swaminathan, S.To be published.
3CVG
Crystal structure of a periplasmic putative metal binding protein
- PDB DOI: https://doi.org/10.2210/pdb3CVG/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Coccidioides immitis RS
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-04-18 Released: 2008-05-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.97 Å
- R-Value Free: 0.289
- R-Value Work: 0.259
- R-Value Observed: 0.259
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative metal binding protein | 294 | Coccidioides immitis RS | Mutation(s): 0 Gene Names: CIMG_05057 |  | |
UniProt | |||||
Find proteins for J3KFC8 (Coccidioides immitis (strain RS)) Explore J3KFC8 Go to UniProtKB: J3KFC8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | J3KFC8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | E [auth A], F [auth B], G [auth C], H [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.97 Å
- R-Value Free: 0.289
- R-Value Work: 0.259
- R-Value Observed: 0.259
- Space Group: P 42 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 150.782 | α = 90 |
| b = 150.782 | β = 90 |
| c = 116.687 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| CBASS | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELXD | phasing |
| SHARP | phasing |
Entry History
Deposition Data
- Released Date: 2008-05-13 Deposition Author(s): Agarwal, R., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2008-05-13
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2021-02-03
Changes: Database references, Derived calculations, Structure summary
