Download MendeleyCrystal structure of riboflavin kinase from Thermoplasma acidophilum.
Bonanno, J.B., Rutter, M., Bain, K.T., Mendoza, M., Romero, R., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3CTA
Crystal structure of riboflavin kinase from Thermoplasma acidophilum
- PDB DOI: https://doi.org/10.2210/pdb3CTA/pdb
- Classification: TRANSFERASE
- Organism(s): Thermoplasma acidophilum DSM 1728
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2008-04-11 Released: 2008-04-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.270
- R-Value Work: 0.236
- R-Value Observed: 0.237
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Riboflavin kinase | 230 | Thermoplasma acidophilum DSM 1728 | Mutation(s): 0 Gene Names: rfk, Ta1064 EC: 2.7.1 |  | |
UniProt | |||||
Find proteins for Q9HJA6 (Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)) Explore Q9HJA6 Go to UniProtKB: Q9HJA6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9HJA6 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.270
- R-Value Work: 0.236
- R-Value Observed: 0.237
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 77.087 | α = 90 |
| b = 82.987 | β = 90 |
| c = 80.544 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| MAR345 | data collection |
| MOSFLM | data reduction |
| SHELXCD | phasing |
| SHELXE | model building |
Entry History
Deposition Data
- Released Date: 2008-04-29 Deposition Author(s): Bonanno, J.B., Rutter, M., Bain, K.T., Mendoza, M., Romero, R., Smith, D., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2008-04-29
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2018-11-14
Changes: Data collection, Derived calculations, Structure summary - Version 1.4: 2021-02-03
Changes: Database references, Structure summary - Version 1.5: 2024-02-21
Changes: Data collection, Database references
