Download MendeleyCrystal structure of the conserved protein of unknown function DIP1874 from Corynebacterium diphtheriae.
Kim, Y., Wu, R., Clancy, S., Joachimiak, A.To be published.
3CP3
Crystal structure of conserved protein of unknown function DIP1874 from Corynebacterium diphtheriae
- PDB DOI: https://doi.org/10.2210/pdb3CP3/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Corynebacterium diphtheriae NCTC 13129
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2008-03-31 Released: 2008-04-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.229
- R-Value Work: 0.188
- R-Value Observed: 0.190
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Uncharacterized protein | 148 | Corynebacterium diphtheriae NCTC 13129 | Mutation(s): 0 Gene Names: DIP1874 |  | |
UniProt | |||||
Find proteins for Q6NFL3 (Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis)) Explore Q6NFL3 Go to UniProtKB: Q6NFL3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6NFL3 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACY Query on ACY | B [auth A] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.229
- R-Value Work: 0.188
- R-Value Observed: 0.190
- Space Group: I 41
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 59.374 | α = 90 |
| b = 59.374 | β = 90 |
| c = 98.948 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-3000 | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2008-04-15 Deposition Author(s): Kim, Y., Wu, R., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2008-04-15
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2024-02-21
Changes: Data collection, Database references, Derived calculations - Version 1.3: 2024-04-03
Changes: Refinement description
