Download MendeleyCrystal structure of an uncharacterized amidohydrolase CAC3332 from Clostridium acetobutylicum.
Malashkevich, V.N., Toro, R., Ramagopal, U.A., Bonanno, J.B., Meyer, A., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3CJP
Crystal structure of an uncharacterized amidohydrolase CAC3332 from Clostridium acetobutylicum
- PDB DOI: https://doi.org/10.2210/pdb3CJP/pdb
- Classification: HYDROLASE
- Organism(s): Clostridium acetobutylicum ATCC 824
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-03-13 Released: 2008-03-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.241
- R-Value Work: 0.184
- R-Value Observed: 0.187
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Predicted amidohydrolase, dihydroorotase family | 272 | Clostridium acetobutylicum ATCC 824 | Mutation(s): 0 Gene Names: CA_C3337 |  | |
UniProt | |||||
Find proteins for Q97DY3 (Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)) Explore Q97DY3 Go to UniProtKB: Q97DY3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q97DY3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | C [auth A], D [auth A], E [auth B], F [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.241
- R-Value Work: 0.184
- R-Value Observed: 0.187
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 47.628 | α = 90 |
| b = 77.273 | β = 96.09 |
| c = 72.661 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| SHELX | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| CBASS | data collection |
| HKL-2000 | data reduction |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2008-03-25 Deposition Author(s): Malashkevich, V.N., Toro, R., Ramagopal, U.A., Bonanno, J.B., Meyer, A., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2008-03-25
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2018-11-14
Changes: Data collection, Structure summary - Version 1.4: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2024-02-21
Changes: Data collection, Database references
