Download MendeleyCrystal structure of a domain of pyruvate-formate lyase-activating enzyme from Bacteroides vulgatus ATCC 8482.
Nocek, B., Hendricks, R., Hatzos, C., Jedrzejczak, R., Joachimiak, A.To be published.
3CAN
Crystal structure of a domain of pyruvate-formate lyase-activating enzyme from Bacteroides vulgatus ATCC 8482
- PDB DOI: https://doi.org/10.2210/pdb3CAN/pdb
- Classification: LYASE ACTIVATOR
- Organism(s): Phocaeicola vulgatus ATCC 8482
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2008-02-20 Released: 2008-03-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.182
- R-Value Work: 0.162
- R-Value Observed: 0.163
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Pyruvate-formate lyase-activating enzyme | 182 | Phocaeicola vulgatus ATCC 8482 | Mutation(s): 0 Gene Names: BVU_1420 |  | |
UniProt | |||||
Find proteins for A6L094 (Phocaeicola vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / CCUG 4940 / NBRC 14291 / NCTC 11154)) Explore A6L094 Go to UniProtKB: A6L094 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A6L094 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.182
- R-Value Work: 0.162
- R-Value Observed: 0.163
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 73.768 | α = 90 |
| b = 73.768 | β = 90 |
| c = 101.358 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| SHELX | phasing |
| Coot | model building |
| MLPHARE | phasing |
| PHENIX | phasing |
| REFMAC | phasing |
| ARP/wARP | model building |
Entry History
Deposition Data
- Released Date: 2008-03-04 Deposition Author(s): Nocek, B., Hendricks, R., Hatzos, C., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2008-03-04
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
