Download MendeleyCrystal structure of 5'-nucleotidase from Candida albicans.
Patskovsky, Y., Romero, R., Gilmore, M., Eberle, M., Bain, K., Smith, D., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3C9F
Crystal structure of 5'-nucleotidase from Candida albicans SC5314
- PDB DOI: https://doi.org/10.2210/pdb3C9F/pdb
- Classification: HYDROLASE
- Organism(s): Candida albicans SC5314
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2008-02-15 Released: 2008-02-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.225
- R-Value Work: 0.186
- R-Value Observed: 0.188
wwPDB Validation 3D Report Full Report
This is version 1.6 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 5'-nucleotidase | 557 | Candida albicans SC5314 | Mutation(s): 6 Gene Names: USHA, CaO19.12802, CaO19.5342 |  | |
UniProt | |||||
Find proteins for Q5A5Q7 (Candida albicans (strain SC5314 / ATCC MYA-2876)) Explore Q5A5Q7 Go to UniProtKB: Q5A5Q7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5A5Q7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | C [auth A], F [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| FMT Query on FMT | E [auth A], J [auth B] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | ||
| NA Query on NA | D [auth A], G [auth B], H [auth B], I [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.225
- R-Value Work: 0.186
- R-Value Observed: 0.188
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 103.946 | α = 90 |
| b = 106.74 | β = 90 |
| c = 150.656 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SHELXD | phasing |
| REFMAC | refinement |
| MAR345 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2008-02-26 Deposition Author(s): Patskovsky, Y., Romero, R., Gilmore, M., Eberle, M., Bain, K., Smith, D., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2008-02-26
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2018-11-14
Changes: Data collection, Structure summary - Version 1.4: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2021-10-20
Changes: Database references - Version 1.6: 2024-02-21
Changes: Data collection, Refinement description
