Download MendeleyCrystal Structure of Predicted Nucleotide-Binding Protein from Idiomarina baltica.
Patskovsky, Y., Toro, R., Meyer, A.J., Dickey, M., Eberle, M., Koss, J., Groshong, C., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C.To be published.
3BQ9
Crystal structure of predicted nucleotide-binding protein from Idiomarina baltica OS145
- PDB DOI: https://doi.org/10.2210/pdb3BQ9/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Idiomarina baltica OS145
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2007-12-19 Released: 2008-01-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.271
- R-Value Work: 0.210
- R-Value Observed: 0.212
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Predicted Rossmann fold nucleotide-binding domain-containing protein | 460 | Idiomarina baltica OS145 | Mutation(s): 0 Gene Names: OS145_13019 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], G [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | D [auth A] E [auth A] F [auth A] H [auth B] I [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.271
- R-Value Work: 0.210
- R-Value Observed: 0.212
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 98.415 | α = 90 |
| b = 171.857 | β = 90 |
| c = 57.362 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SHELX | model building |
| REFMAC | refinement |
| MAR345 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELX | phasing |
Entry History
Deposition Data
- Released Date: 2008-01-01 Deposition Author(s): Patskovsky, Y., Toro, R., Meyer, A.J., Dickey, M., Eberle, M., Koss, J., Groshong, C., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2008-01-01
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2018-11-14
Changes: Data collection, Structure summary - Version 1.4: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2024-02-21
Changes: Data collection, Database references, Refinement description
