Download MendeleyCrystal Structure of MarR family Transcription Regulator SP03579.
Kim, Y., Volkart, L., Keigher, L., Joachimiak, A.To be published.
3BJ6
Crystal structure of MarR family transcription regulator SP03579
- PDB DOI: https://doi.org/10.2210/pdb3BJ6/pdb
- Classification: TRANSCRIPTION REGULATOR
- Organism(s): Ruegeria pomeroyi DSS-3
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2007-12-03 Released: 2007-12-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.01 Å
- R-Value Free: 0.198
- R-Value Work: 0.161
- R-Value Observed: 0.163
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transcriptional regulator, MarR family | 152 | Ruegeria pomeroyi DSS-3 | Mutation(s): 0 Gene Names: SPO3579 |  | |
UniProt | |||||
Find proteins for Q5LMI4 (Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)) Explore Q5LMI4 Go to UniProtKB: Q5LMI4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5LMI4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EOH Query on EOH | C [auth A] D [auth A] E [auth A] F [auth B] G [auth B] | ETHANOL C2 H6 O LFQSCWFLJHTTHZ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.01 Å
- R-Value Free: 0.198
- R-Value Work: 0.161
- R-Value Observed: 0.163
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 55.701 | α = 90 |
| b = 55.778 | β = 90 |
| c = 125.765 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-3000 | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| SHELXS | phasing |
| MLPHARE | phasing |
| RESOLVE | phasing |
| ARP/wARP | model building |
Entry History
Deposition Data
- Released Date: 2007-12-18 Deposition Author(s): Kim, Y., Volkart, L., Keigher, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-12-18
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
