Download MendeleyCrystal structure of (Pro-Pro-Gly)9
Okuyama, K., Morimoto, T., Hongo, C., Hosaka, N., Nishino, N.To be published.
3AH9
Crystal structure of (Pro-Pro-Gly)9 at 1.1 A resolution
- PDB DOI: https://doi.org/10.2210/pdb3AH9/pdb
- Classification: STRUCTURAL PROTEIN
- Organism(s): Saimiriine herpesvirus 2
- Mutation(s): No
- Deposited: 2010-04-22 Released: 2011-04-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.08 Å
- R-Value Free: 0.191
- R-Value Work: 0.165
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| collagen-like peptide | 27 | N/A | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q80BK4 (Saimiriine herpesvirus 2) Explore Q80BK4 Go to UniProtKB: Q80BK4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q80BK4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACY Query on ACY | K [auth E], L [auth E] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |  | ||
| AZI Query on AZI | G [auth B], H [auth C], I [auth D], J [auth E] | AZIDE ION N3 IVRMZWNICZWHMI-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.08 Å
- R-Value Free: 0.191
- R-Value Work: 0.165
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 26.416 | α = 90 |
| b = 25.99 | β = 90.03 |
| c = 80.241 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| PHASER | phasing |
| SHELXL-97 | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2011-04-06 Deposition Author(s): Okuyama, K., Morimoto, T., Hongo, C., Hosaka, N., Nishino, N.
Revision History (Full details and data files)
- Version 1.0: 2011-04-06
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
