Download MendeleyStructure of Ribosome maturation protein RimM and Ribosomal protein S19
Kaminishi, T., Takemoto, C., Tatsuguchi, A., Kawazoe, M., Shirouzu, M., Yokoyama, S.To be published.
3A1P
Structure of Ribosome maturation protein RimM and Ribosomal protein S19
- PDB DOI: https://doi.org/10.2210/pdb3A1P/pdb
- Classification: RIBOSOMAL PROTEIN
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2009-04-21 Released: 2010-04-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.245
- R-Value Work: 0.197
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosome maturation factor rimM | 162 | Thermus thermophilus HB8 | Mutation(s): 0 Gene Names: rimM |  | |
UniProt | |||||
Find proteins for Q5SJH5 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SJH5 Go to UniProtKB: Q5SJH5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SJH5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 30S ribosomal protein S19 | 93 | Thermus thermophilus HB8 | Mutation(s): 0 Gene Names: rpsS |  | |
UniProt | |||||
Find proteins for Q5SHP2 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SHP2 Go to UniProtKB: Q5SHP2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SHP2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| UNX Query on UNX | E [auth D] | UNKNOWN ATOM OR ION X |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.245
- R-Value Work: 0.197
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 57.397 | α = 90 |
| b = 67.491 | β = 94.82 |
| c = 62.002 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PHASER | phasing |
| CNS | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2010-04-21 Deposition Author(s): Kaminishi, T., Takemoto, C., Tatsuguchi, A., Kawazoe, M., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2010-04-21
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-11
Changes: Refinement description - Version 1.3: 2023-11-01
Changes: Data collection, Database references, Refinement description
