3ZP3
INFLUENZA VIRUS (VN1194) H5 HA A138V mutant with LSTc
- PDB DOI: https://doi.org/10.2210/pdb3ZP3/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Influenza A virus (A/Vietnam/1194/2004(H5N1))
- Expression System: Gallus gallus
- Mutation(s): Yes 
- Deposited: 2013-02-26 Released: 2013-10-02 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.65 Å
- R-Value Free: 0.277 
- R-Value Work: 0.236 
- R-Value Observed: 0.238 
This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
HAEMAGGLUTININ | A [auth E] | 340 | Influenza A virus (A/Vietnam/1194/2004(H5N1)) | Mutation(s): 1  | |
UniProt | |||||
Find proteins for Q6DQ34 (Influenza A virus) Explore Q6DQ34  Go to UniProtKB:  Q6DQ34 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6DQ34 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
HAEMAGGLUTININ | B [auth F] | 160 | Influenza A virus (A/Vietnam/1194/2004(H5N1)) | Mutation(s): 0  | |
UniProt | |||||
Find proteins for Q6DQ34 (Influenza A virus) Explore Q6DQ34  Go to UniProtKB:  Q6DQ34 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6DQ34 | ||||
Sequence AnnotationsExpand | |||||
|
Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SIA Query on SIA | C [auth E] | N-acetyl-alpha-neuraminic acid C11 H19 N O9 SQVRNKJHWKZAKO-YRMXFSIDSA-N | |||
NAG Query on NAG | E [auth F], F | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
GAL Query on GAL | D [auth E] | beta-D-galactopyranose C6 H12 O6 WQZGKKKJIJFFOK-FPRJBGLDSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.65 Å
- R-Value Free: 0.277 
- R-Value Work: 0.236 
- R-Value Observed: 0.238 
- Space Group: H 3 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 101.07 | α = 90 |
b = 101.07 | β = 90 |
c = 449.21 | γ = 120 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
Entry History 
Deposition Data
- Released Date: 2013-10-02  Deposition Author(s): Liu, J., Stevens, D.J., Gamblin, S.J., Skehel, J.J.
Revision History (Full details and data files)
- Version 1.0: 2013-10-02
Type: Initial release - Version 1.1: 2013-11-20
Changes: Database references - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Data collection, Database references, Derived calculations, Other, Structure summary