3VE0

Crystal structure of Sudan Ebolavirus Glycoprotein (strain Boniface) bound to 16F6

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.35 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.222 
  • R-Value Observed: 0.225 

wwPDB Validation   3D Report Full Report


This is version 2.1 of the entry. See complete history. 



Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Envelope glycoproteinA [auth I]298Sudan virus - Boniface, Sudan,1976Mutation(s): 0 
Gene Names: GP
UniProt
Find proteins for Q66814 (Sudan ebolavirus (strain Boniface-76))
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Go to UniProtKB:  Q66814
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UniProt GroupQ66814
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Envelope glycoproteinB [auth J]167Sudan virus - Boniface, Sudan,1976Mutation(s): 0 
Gene Names: GP
UniProt
Find proteins for Q66814 (Sudan ebolavirus (strain Boniface-76))
Explore Q66814 
Go to UniProtKB:  Q66814
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UniProt GroupQ66814
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
16F6 Antibody chain AC [auth A]220Mus musculusMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
16F6 Antibody chain BD [auth B]212Mus musculusMutation(s): 0 
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Oligosaccharides

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Entity ID: 5
MoleculeChains Length2D Diagram Glycosylation3D Interactions
alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranoseE [auth C],
F [auth D]		3N-Glycosylation
Glycosylation Resources
GlyTouCan:  G62182OO
GlyCosmos:  G62182OO
GlyGen:  G62182OO
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.35 Å
  • R-Value Free: 0.289 
  • R-Value Work: 0.222 
  • R-Value Observed: 0.225 
  • Space Group: I 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 194.859α = 90
b = 194.859β = 90
c = 194.859γ = 90
Software Package:
Software NamePurpose
ADSCdata collection
PHASERphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-04-18
    Type: Initial release
  • Version 1.1: 2012-04-25
    Changes: Database references
  • Version 1.2: 2012-05-30
    Changes: Database references
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary
  • Version 2.1: 2023-09-13
    Changes: Data collection, Database references, Refinement description, Structure summary